PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g028060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 177aa    MW: 20206.2 Da    PI: 9.9073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g028060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002293115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C++ F +   L  H+r+H
  Csa06g028060.1  93 HKCSICDQIFGTGQALGGHMRKH 115
                     79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-104873IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-648115No hitNo description
PROSITE profilePS5015710.1384976IPR007087Zinc finger, C2H2
SMARTSM003550.434971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139128.6E-1093117IPR007087Zinc finger, C2H2
PROSITE profilePS501579.01693120IPR007087Zinc finger, C2H2
SMARTSM003550.01593115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKRDRYDYEE SVKHIDIVKS LMMLSQSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS  60
FQALGGHRAS HKKPKMSVDQ EQVKHRNNEN DMHKCSICDQ IFGTGQALGG HMRKHRASMM  120
TEQSVIPSPL VYSRPVLNRC SSSKKILDLN LTPLENDLVF IFGKNLVPQI DLKFVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329660.0AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515858.11e-130PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-79ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLD7LUK31e-116D7LUK3_ARALL; Zinc finger family protein
TrEMBLQ9LFG01e-116Q9LFG0_ARATH; At3g53600
STRINGAT3G53600.11e-116(Arabidopsis thaliana)
STRINGfgenesh2_kg.5__1736__AT3G53600.11e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-120C2H2 family protein